/**
 * LoadFile 1
 * 
 * Loads a text file that contains two numbers separated by a tab ('\t').
 * A new pair of numbers is loaded each frame and used to draw a point on the screen.
 */

String[] lines;
int index = 0;
float trans = .0000029;


void setup() {
  size(770, 540);
  //background(200, 220, 220, 34);
  background(0);
  smooth();
  translate(10,0);
  //noStroke();
  //frameRate(12);
  PFont font;
// The font must be located in the sketch's 
// "data" directory to load successfully
//chromosomelabels
font = loadFont("Futura-Bold.vlw"); 
textFont(font); 
textSize(18);
    //text("The Distribution of Intellectual Property Claims on the Human Genome", 20, 520);
    textSize(10);
   // text("Source Data: Jensen and Murray. 2005. Intellectual Property Landscape of the Human Genome. Science 310:239.", 90, 530);
textSize(14);
    /* text("1", 6, 40);
     //text("2", 6, 60);
     //text("3", 6, 80);
     //text("4", 6, 100);
     text("5", 100, 12);
     text("6", 120, 12);
     text("7", 140, 12);
     text("8", 160, 12);
     text("9", 180, 12);
     text("10", 200, 12);
     text("11", 220, 12);
     text("12", 240, 12);
     text("13", 260, 12);
     text("14", 280, 12);
     text("15", 300, 12);
     text("16", 320, 12);
     text("17", 340, 12);
     text("18", 360, 12);
     text("19", 380, 12);
     text("20", 400, 12);
     text("21", 420, 12);
     text("22", 440, 12);
     text("X", 540, 12);
     text("Y", 560, 12);
     text("mt", 580, 12); */
     
 //    fill(230, 34, 145);
  lines = loadStrings("allChrsPatents.txt");
  
  int[] chrlength = new int[25];
    chrlength[1] = 247249719;
    chrlength[2] = 242951149;
    chrlength[3] = 199501827;
    chrlength[4] = 191273063;
    chrlength[5] = 180857866;
    chrlength[6] = 170899992;
    chrlength[7] = 158821424;
    chrlength[8] = 146274826;
    chrlength[9] = 140273252;
    chrlength[10] = 135374737;
    chrlength[11] = 134452384;
    chrlength[12] = 132349534;
    chrlength[13] = 114142980;
    chrlength[14] = 106368585;
    chrlength[15] = 100338915;
    chrlength[16] = 88827254;
    chrlength[17] = 78774742;
    chrlength[18] = 76117153;
    chrlength[19] = 63811651;
    chrlength[20] = 62435964;
    chrlength[21] = 46944323;
    chrlength[22] = 49691432;
    chrlength[23] = 154913754;
    chrlength[24] = 57772954;
    chrlength[0] = 16571;

  //color and draw chromosomes
    for (int i = 0; i < 24; i++){
    stroke((i*2)*10, 150, (i+1)*10, 50);
    strokeWeight(18);
      line(20,(i*20)+29, (chrlength[i+1] * trans)+20, (i*20)+29);

}
for (int i = 0; i < 22; i++) {
      text(i+1, -8, (i*20)+35);  
}   
  
   text("X", -8, 475);
     text("Y", -8, 495);
     
  //XY
      stroke(0, 150, 255, 50);
      line(20, 469, (chrlength[23]* trans)+20, 469);
      line(20, 489, (chrlength[24] * trans)+20, 489);
     //mt
     // stroke(255, 0, 0, 50); 
     // line(589, 20, 589, chrlength[0]* .01);
      
}

void draw() {
  noStroke();
    translate(10,0);
  if (index < lines.length) {
    String[] pieces = split(lines[index], '\t');
    if (pieces.length == 10) {
      float pat = int(pieces[0]);
      float chr = int(pieces[2]);
      float x = int(pieces[3]) * trans;
      float y = int(pieces[4]) * trans;
      float num = int(pieces[5]) * 10; 
      
      //textSize(5);
      //text((pieces[9]), chr*20, x+20);
      
   //fill(100, 100, 200, num);
   fill(255, 255, 255, 200);
   rect(x+20, chr*20, y-x, 20);
     println(x);
       }
      
    // Go to the next line for the next run through draw()
    index = index + 1;
  
  } 
    
  
}